PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013686-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 553aa    MW: 60399.2 Da    PI: 6.5257
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013686-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.2e-09369416455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  WALNUT_00013686-RA 369 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 416
                         8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.28E-11363420No hitNo description
SuperFamilySSF474593.27E-17363435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-17365433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663365415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-6369416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10371421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MEKESTTPLN WTTSSFGMEI QPNDLNCAAA DQLPNSFFNP NWDNSVDQSD PFESALSSIV  60
SSPAASNAAA IPGRECLMIR ELIGRLGNIC NSGEISPQTY VAGNTTTNNN STNTSGYNTP  120
LNSPPKLNLS IMDSQIRGSL PINGHQVPFH PTLAPFSADP GFAERAARFS CFGNTNCIGL  180
NETDFPYGLM PGMEYGKMSN ASSNQQFKVV GSQMGVQENN KQEGNVVVKR KFIRLPRPST  240
PENAELGDSR EGSSVSEQIP GGEVSTKVDS DANARKRKSI SRGKAKETPS TPSAKHQKTT  300
VENEESNAKR SRQDEDAGNE KDSAKAKAKA DSKAAGDGNQ KQNKDNSKPP EPPKDYIHVR  360
ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG KAVMLDEIIN YVQSLQRQVE  420
FLSMKLATVN PRMDFNMEAQ LSKDIFQSRG ALPPTLYPLD SVMRSIPYGY QPQQMQALHG  480
GIANETENRF PVNSLSALSR NNPSVQLHLP PMDGYGEAVP QVSAPWEDDL QSVVQMGFGQ  540
NQQQSFHGIG IDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007034153.10.0Basic helix-loop-helix DNA-binding superfamily protein isoform 1
TrEMBLA0A0U2RCR80.0A0A0U2RCR8_9R
STRINGPOPTR_0002s23650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-77bHLH family protein